Maize experimental multi-environment data sets (Genomes to Fields Initiative)

This data are used as toy data for several functions of learnMET package.
Physical map (SNP information generated using a genotyping-by-sequence (GBS) method for the inbred lines) for 106,414 markers.

Format

data.frame with genotype values of maize hybrids (in silico genotype matrix based on inbred lines) stored, with geno_ID as row.names and markers in columns. Dimensions are n=1,913 and p=106,414.

Source

Subset of the publicly available datasets from the Genomes to Fields Initiative.
All data are publicly available at: https://www.genomes2fields.org/resources/,

References

McFarland BA, AlKhalifah N, Bohn M, Bubert J, Buckler ES, Ciampitti I, Edwards J, Ertl D, Gage JL, Falcon CM, others (2020). “Maize genomes to fields (G2F): 2014--2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets.” BMC research notes, 13(1), 1--6.
AlKhalifah N, Campbell DA, Falcon CM, Gardiner JM, Miller ND, Romay MC, Walls R, Walton R, Yeh C, Bohn M, others (2018). “Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets.” BMC Research Notes, 11(1), 1--5.

Author

Cathy C. Westhues cathy.jubin@uni-goettingen.de